Robert B. Best, Ph.D.
Theoretical Biophysical Chemistry Section, Laboratory of Chemical Physics
Building 5, Room 130
5 Memorial Drive
Bethesda, MD 20814
My research is concerned with the dynamics of large biomolecules and in particular with protein dynamics, folding, and misfolding. Novel simulation and theoretical methods are developed as needed to address specific problems. A strong emphasis is placed on making a connection with experiment, both in using experimental data to help improve simulation methodology or sampling, and simulations as a tool to assist the interpretation of results.
Recent work has focused on the following:
- the optimization of protein force fields using empirical data for peptides and macromolecules in solution;
- interpretation of single-molecule fluorescence or pulling experiments using simulation and theory;
- coarse-grained master equations as a tool for interpreting peptide dynamics in simulations;
- diffusion models of protein folding;
- the binding mechanism of intrinsically disordered proteins;
- the influence of molecular chaperonins on folding and misfolding;
- the mechanism of substrate transport in hydrogenase enzymes; and
- methods for identifying cryptic binding pockets in proteins.
To view more about my research, visit my lab's website.
- United Kingdom Royal Society University Research Fellow, University of Cambridge, 2007–2012
- Ph.D., University of Cambridge, 2003
Zheng W, De Sancho D, Hoppe T, Best RB. Dependence of internal friction on folding mechanism. J Am Chem Soc. 2015;137(9):3283-90.
Knott M, Best RB. Discriminating binding mechanisms of an intrinsically disordered protein via a multi-state coarse-grained model. J Chem Phys. 2014;140(17):175102.
Best RB, Hummer G, Eaton WA. Native contacts determine protein folding mechanisms in atomistic simulations. Proc Natl Acad Sci U S A. 2013;110(44):17874-9.
Wuttke R, Hofmann H, Nettels D, Borgia MB, Mittal J, Best RB, Schuler B. Temperature-dependent solvation modulates the dimensions of disordered proteins. Proc Natl Acad Sci U S A. 2014;111(14):5213-8.
Sirur A, Best RB. Effects of interactions with the GroEL cavity on protein folding rates. Biophys J. 2013;104(5):1098-106.